| 1 | |  Brentford | 46 | 23 | 16 | 7 | 65 | 36 | 29 | 85 | B17:00 | 11/04/09 | R 42  Brentford 1 Exeter City 1 G17:00 | 13/04/09 | R 43 Bournemouth 0 Brentford 1 G17:00 | 18/04/09 | R 44 Brentford 3 Accrington Stanley 0 M21:45 | 21/04/09 | R 39 Dagenham and Redbridge FC 3 Brentford 1 G17:00 | 25/04/09 | R 45 Darlington 1 Brentford 3 G17:00 | 02/05/09 | R 46 Brentford 2 Luton Town 0 |
| 2 | |  Exeter City | 46 | 22 | 13 | 11 | 65 | 50 | 15 | 79 | G17:00 | 04/04/09 | R 41 Exeter City 2 Dagenham and Redbridge FC 1 B17:00 | 11/04/09 | R 42 Brentford 1 Exeter City 1 G17:00 | 13/04/09 | R 43 Exeter City 1 Wycombe Wanderers 0 G17:00 | 18/04/09 | R 44 Lincoln City 0 Exeter City 1 B17:00 | 25/04/09 | R 45 Exeter City 2 Morecambe FC 2 G17:00 | 02/05/09 | R 46 Rotherham United 0 Exeter City 1 |
| 3 | |  Wycombe Wanderers | 46 | 20 | 18 | 8 | 54 | 33 | 21 | 78 | G17:00 | 11/04/09 | R 42 Wycombe Wanderers 1 Gillingham FC 0 M17:00 | 13/04/09 | R 43 Exeter City 1 Wycombe Wanderers 0 G17:00 | 18/04/09 | R 44 Wycombe Wanderers 3 Aldershot Town FC 0 G21:45 | 21/04/09 | R 41 Luton Town 0 Wycombe Wanderers 1 B17:00 | 25/04/09 | R 45 Port Vale 1 Wycombe Wanderers 1 M17:00 | 02/05/09 | R 46 Wycombe Wanderers 1 Notts County 2 |
| 4 | |  Bury | 46 | 21 | 15 | 10 | 63 | 43 | 20 | 78 | B17:00 | 13/04/09 | R 43 Darlington 2 Bury 2 G17:00 | 18/04/09 | R 44 Bury 3 Macclesfield Town 0 B17:00 | 25/04/09 | R 45 Gillingham FC 0 Bury 0 G17:00 | 02/05/09 | R 46 Bury 1 Accrington Stanley 0 G21:45 | 07/05/09 | R semifinal Shrewsbury Town 0 Bury 1 M14:00 | 10/05/09 | R semifinal Bury (3) 0 Shrewsbury Town (3) 1 |
| 5 | |  Gillingham FC | 46 | 21 | 12 | 13 | 58 | 55 | 3 | 75 | G17:00 | 18/04/09 | R 44 Chesterfield FC 0 Gillingham FC 1 B17:00 | 25/04/09 | R 45 Gillingham FC 0 Bury 0 G17:00 | 02/05/09 | R 46 Rochdale 0 Gillingham FC 1 B21:45 | 07/05/09 | R semifinal Rochdale 0 Gillingham FC 0 G20:30 | 10/05/09 | R semifinal Gillingham FC 2 Rochdale 1 G17:00 | 23/05/09 | R final Gillingham FC 1 Shrewsbury Town 0 |
| 6 | |  Rochdale | 46 | 19 | 13 | 14 | 70 | 59 | 11 | 70 | B17:00 | 13/04/09 | R 43 Shrewsbury Town 1 Rochdale 1 M14:45 | 18/04/09 | R 44 Rochdale 0 Darlington 2 B17:00 | 25/04/09 | R 45 Luton Town 1 Rochdale 1 M17:00 | 02/05/09 | R 46 Rochdale 0 Gillingham FC 1 B21:45 | 07/05/09 | R semifinal Rochdale 0 Gillingham FC 0 M20:30 | 10/05/09 | R semifinal Gillingham FC 2 Rochdale 1 |
| 7 | |  Shrewsbury Town | 46 | 17 | 18 | 11 | 61 | 44 | 17 | 69 | G17:00 | 18/04/09 | R 44 Rotherham United 1 Shrewsbury Town 2 B17:00 | 25/04/09 | R 45 Shrewsbury Town 0 Lincoln City 0 G17:00 | 02/05/09 | R 46 Dagenham and Redbridge FC 1 Shrewsbury Town 2 M21:45 | 07/05/09 | R semifinal Shrewsbury Town 0 Bury 1 G14:00 | 10/05/09 | R semifinal Bury (3) 0 Shrewsbury Town (3) 1 M17:00 | 23/05/09 | R final Gillingham FC 1 Shrewsbury Town 0 |
| 8 | |  Dagenham and Redbridge FC | 46 | 19 | 11 | 16 | 77 | 53 | 24 | 68 | G17:00 | 11/04/09 | R 42 Dagenham and Redbridge FC 3 Aldershot Town FC 1 M17:00 | 13/04/09 | R 43 Gillingham FC 2 Dagenham and Redbridge FC 1 G17:00 | 18/04/09 | R 44 Dagenham and Redbridge FC 3 Bradford City 0 G21:45 | 21/04/09 | R 39 Dagenham and Redbridge FC 3 Brentford 1 G17:00 | 25/04/09 | R 45 Notts County 0 Dagenham and Redbridge FC 3 M17:00 | 02/05/09 | R 46 Dagenham and Redbridge FC 1 Shrewsbury Town 2 |
| 9 | |  Bradford City | 46 | 18 | 13 | 15 | 66 | 55 | 11 | 67 | B17:00 | 04/04/09 | R 41 Bradford City 1 Brentford 1 M17:15 | 10/04/09 | R 42 Morecambe FC 2 Bradford City 1 B17:00 | 13/04/09 | R 43 Bradford City 1 Lincoln City 1 M17:00 | 18/04/09 | R 44 Dagenham and Redbridge FC 3 Bradford City 0 G17:00 | 25/04/09 | R 45 Bradford City 3 Rotherham United 0 G17:00 | 02/05/09 | R 46 Chesterfield FC 0 Bradford City 2 |
| 10 | |  Chesterfield FC | 46 | 16 | 15 | 15 | 62 | 57 | 5 | 63 | B21:30 | 07/04/09 | R 31 Chesterfield FC 1 Lincoln City 1 B17:00 | 11/04/09 | R 42 Chesterfield FC 0 Darlington 0 B17:00 | 13/04/09 | R 43 Luton Town 0 Chesterfield FC 0 M17:00 | 18/04/09 | R 44 Chesterfield FC 0 Gillingham FC 1 M17:00 | 25/04/09 | R 45 Accrington Stanley 1 Chesterfield FC 0 M17:00 | 02/05/09 | R 46 Chesterfield FC 0 Bradford City 2 |
| 11 | |  Morecambe FC | 46 | 15 | 18 | 13 | 53 | 56 | -3 | 63 | G17:15 | 10/04/09 | R 42 Morecambe FC 2 Bradford City 1 G17:00 | 13/04/09 | R 43 Macclesfield Town 0 Morecambe FC 1 G17:00 | 18/04/09 | R 44 Morecambe FC 1 Notts County 0 M21:45 | 21/04/09 | R 35 Rotherham United 3 Morecambe FC 2 B17:00 | 25/04/09 | R 45 Exeter City 2 Morecambe FC 2 M17:00 | 02/05/09 | R 46 Morecambe FC 0 Bournemouth 4 |
| 12 | |  Darlington | 46 | 20 | 12 | 14 | 61 | 44 | 17 | 62 | M21:45 | 07/04/09 | R 31 Darlington 1 Wycombe Wanderers 2 B17:00 | 11/04/09 | R 42 Chesterfield FC 0 Darlington 0 B17:00 | 13/04/09 | R 43 Darlington 2 Bury 2 G14:45 | 18/04/09 | R 44 Rochdale 0 Darlington 2 M17:00 | 25/04/09 | R 45 Darlington 1 Brentford 3 G17:00 | 02/05/09 | R 46 Chester FC 1 Darlington 2 |
| 13 | |  Lincoln City | 46 | 14 | 17 | 15 | 53 | 52 | 1 | 59 | B21:30 | 07/04/09 | R 31 Chesterfield FC 1 Lincoln City 1 B17:00 | 11/04/09 | R 42 Lincoln City 0 Luton Town 0 B17:00 | 13/04/09 | R 43 Bradford City 1 Lincoln City 1 M17:00 | 18/04/09 | R 44 Lincoln City 0 Exeter City 1 B17:00 | 25/04/09 | R 45 Shrewsbury Town 0 Lincoln City 0 M17:00 | 02/05/09 | R 46 Lincoln City 0 Aldershot Town FC 2 |
| 14 | |  Rotherham United | 46 | 21 | 12 | 13 | 60 | 46 | 14 | 58 | G17:00 | 11/04/09 | R 42 Rotherham United 2 Notts County 1 B17:00 | 13/04/09 | R 43 Port Vale 0 Rotherham United 0 M17:00 | 18/04/09 | R 44 Rotherham United 1 Shrewsbury Town 2 G21:45 | 21/04/09 | R 35 Rotherham United 3 Morecambe FC 2 M17:00 | 25/04/09 | R 45 Bradford City 3 Rotherham United 0 M17:00 | 02/05/09 | R 46 Rotherham United 0 Exeter City 1 |
| 15 | |  Aldershot Town FC | 46 | 14 | 12 | 20 | 59 | 80 | -21 | 54 | B21:45 | 07/04/09 | R 31 Port Vale 0 Aldershot Town FC 0 M17:00 | 11/04/09 | R 42 Dagenham and Redbridge FC 3 Aldershot Town FC 1 B17:00 | 13/04/09 | R 43 Aldershot Town FC 1 Barnet FC 1 M17:00 | 18/04/09 | R 44 Wycombe Wanderers 3 Aldershot Town FC 0 B17:00 | 25/04/09 | R 45 Aldershot Town FC 2 Chester FC 2 G17:00 | 02/05/09 | R 46 Lincoln City 0 Aldershot Town FC 2 |
| 16 | |  Accrington Stanley | 46 | 13 | 11 | 22 | 42 | 59 | -17 | 50 | M17:00 | 04/04/09 | R 41 Accrington Stanley 0 Lincoln City 2 G17:00 | 11/04/09 | R 42 Grimsby Town 0 Accrington Stanley 1 M15:00 | 13/04/09 | R 43 Accrington Stanley 0 Chester FC 1 M17:00 | 18/04/09 | R 44 Brentford 3 Accrington Stanley 0 G17:00 | 25/04/09 | R 45 Accrington Stanley 1 Chesterfield FC 0 M17:00 | 02/05/09 | R 46 Bury 1 Accrington Stanley 0 |
| 17 | |  Barnet FC | 46 | 11 | 15 | 20 | 56 | 74 | -18 | 48 | G21:45 | 07/04/09 | R 31 Barnet FC 2 Rotherham United 0 G17:00 | 11/04/09 | R 42 Barnet FC 1 Bournemouth 0 B17:00 | 13/04/09 | R 43 Aldershot Town FC 1 Barnet FC 1 B17:00 | 18/04/09 | R 44 Barnet FC 1 Luton Town 1 M17:00 | 25/04/09 | R 45 Macclesfield Town 2 Barnet FC 1 M17:00 | 02/05/09 | R 46 Barnet FC 1 Port Vale 2 |
| 18 | |  Port Vale | 46 | 13 | 9 | 24 | 44 | 66 | -22 | 48 | B21:45 | 07/04/09 | R 31 Port Vale 0 Aldershot Town FC 0 M17:00 | 11/04/09 | R 42 Rochdale 1 Port Vale 0 B17:00 | 13/04/09 | R 43 Port Vale 0 Rotherham United 0 M17:00 | 18/04/09 | R 44 Grimsby Town 3 Port Vale 0 B17:00 | 25/04/09 | R 45 Port Vale 1 Wycombe Wanderers 1 G17:00 | 02/05/09 | R 46 Barnet FC 1 Port Vale 2 |
| 19 | |  Notts County | 46 | 11 | 14 | 21 | 49 | 69 | -20 | 47 | M17:00 | 04/04/09 | R 41 Notts County 1 Chester FC 2 M17:00 | 11/04/09 | R 42 Rotherham United 2 Notts County 1 M17:00 | 13/04/09 | R 43 Notts County 0 Grimsby Town 2 M17:00 | 18/04/09 | R 44 Morecambe FC 1 Notts County 0 M17:00 | 25/04/09 | R 45 Notts County 0 Dagenham and Redbridge FC 3 G17:00 | 02/05/09 | R 46 Wycombe Wanderers 1 Notts County 2 |
| 20 | |  Macclesfield Town | 46 | 13 | 8 | 25 | 45 | 77 | -32 | 47 | B17:00 | 04/04/09 | R 41 Macclesfield Town 1 Chesterfield FC 1 G17:00 | 11/04/09 | R 42 Chester FC 0 Macclesfield Town 2 M17:00 | 13/04/09 | R 43 Macclesfield Town 0 Morecambe FC 1 M17:00 | 18/04/09 | R 44 Bury 3 Macclesfield Town 0 G17:00 | 25/04/09 | R 45 Macclesfield Town 2 Barnet FC 1 B17:00 | 02/05/09 | R 46 Grimsby Town 0 Macclesfield Town 0 |
| 21 | |  Bournemouth | 46 | 17 | 12 | 17 | 59 | 51 | 8 | 46 | G17:00 | 04/04/09 | R 41 Bournemouth 4 Rochdale 0 M17:00 | 11/04/09 | R 42 Barnet FC 1 Bournemouth 0 M17:00 | 13/04/09 | R 43 Bournemouth 0 Brentford 1 G17:00 | 18/04/09 | R 44 Chester FC 0 Bournemouth 2 G17:00 | 25/04/09 | R 45 Bournemouth 2 Grimsby Town 1 G17:00 | 02/05/09 | R 46 Morecambe FC 0 Bournemouth 4 |
| 22 | |  Grimsby Town | 46 | 9 | 14 | 23 | 51 | 69 | -18 | 41 | B17:00 | 04/04/09 | R 41 Shrewsbury Town 1 Grimsby Town 1 M17:00 | 11/04/09 | R 42 Grimsby Town 0 Accrington Stanley 1 G17:00 | 13/04/09 | R 43 Notts County 0 Grimsby Town 2 G17:00 | 18/04/09 | R 44 Grimsby Town 3 Port Vale 0 M17:00 | 25/04/09 | R 45 Bournemouth 2 Grimsby Town 1 B17:00 | 02/05/09 | R 46 Grimsby Town 0 Macclesfield Town 0 |
| 23 | |  Chester FC | 46 | 8 | 13 | 25 | 43 | 81 | -38 | 37 | G17:00 | 04/04/09 | R 41 Notts County 1 Chester FC 2 M17:00 | 11/04/09 | R 42 Chester FC 0 Macclesfield Town 2 G15:00 | 13/04/09 | R 43 Accrington Stanley 0 Chester FC 1 M17:00 | 18/04/09 | R 44 Chester FC 0 Bournemouth 2 B17:00 | 25/04/09 | R 45 Aldershot Town FC 2 Chester FC 2 M17:00 | 02/05/09 | R 46 Chester FC 1 Darlington 2 |
| 24 | |  Luton Town | 46 | 13 | 17 | 16 | 58 | 65 | -7 | 26 | B17:00 | 11/04/09 | R 42 Lincoln City 0 Luton Town 0 B17:00 | 13/04/09 | R 43 Luton Town 0 Chesterfield FC 0 B17:00 | 18/04/09 | R 44 Barnet FC 1 Luton Town 1 M21:45 | 21/04/09 | R 41 Luton Town 0 Wycombe Wanderers 1 B17:00 | 25/04/09 | R 45 Luton Town 1 Rochdale 1 M17:00 | 02/05/09 | R 46 Brentford 2 Luton Town 0 |
